Clavibacter capsici

aerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter capsici is a Gram-positive bacterium that exhibits an aerobic metabolism, indicating its requirement for oxygen for growth and survival. This microbe is characterized by its rod-shaped morphology, which is typical of many members within its genus. Clavibacter capsici is primarily found in agricultural environments, where it is associated with various plant substrates. The organism's aerobic nature suggests that it thrives in well-oxygenated soils or plant tissues, contributing to its ecological niche. The Gram-positive nature of Clavibacter capsici signifies a thick peptidoglycan layer in its cell wall, which can influence its susceptibility to certain antibiotics and its interactions with other microorganisms in its environment. This structural feature also plays a role in its ability to form biofilms, potentially aiding in its persistence in agricultural settings. Understanding the aerobic requirements of Clavibacter capsici allows for a clearer insight into its ecological role, particularly in the rhizosphere where oxygen levels can fluctuate. Its adaptation to aerobic conditions may enhance its competitiveness against other microbial species in soil, suggesting a unique ecological strategy that could impact soil health and plant-microbe interactions. Further research into this organism could illuminate its potential roles in agricultural ecosystems, particularly in relation to plant health and soil microbiome dynamics.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter capsici
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter capsici

Accession NumberNZ_CP012574.1

Gene Summary

Adenine Count

6661 bp

Thymine Count

6499 bp

Guanine Count

13653 bp

Cytosine Count

13055 bp

Genome Length

39868 bp

Protein-coding Genes

45 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
methionine--trna ligaseAES38_RS11460Not Available-2453459 - 245503659089.7
bifunctional 2-methylcitrate synthase/citrate synthaseAES38_RS11465Not Available-2455122 - 245627341702.5
nad(p)/fad-dependent oxidoreductaseAES38_RS11470Not Available+2456518 - 245796950862.2
nad(p)h-dependent oxidoreductaseAES38_RS11475Not Available+2458004 - 245858820840.6
gnat family n-acetyltransferaseAES38_RS11480Not Available+2458641 - 245916518263.6
nad(p)-dependent alcohol dehydrogenaseAES38_RS11485Not Available-2459173 - 246021636230.5
tetr family transcriptional regulatorAES38_RS11490Not Available+2460261 - 246085121104.8
duf3021 domain-containing proteinAES38_RS11495Not Available-2460876 - 246131615213.1
hypothetical proteinAES38_RS15875Not Available+2461462 - 24616084791.91
methylisocitrate lyaseAES38_RS11500Not Available-2461612 - 246252632586.1

Displaying genes 2521 – 2530 of 3137 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites