Clavibacter capsici

aerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter capsici is a Gram-positive bacterium that exhibits an aerobic metabolism, indicating its requirement for oxygen for growth and survival. This microbe is characterized by its rod-shaped morphology, which is typical of many members within its genus. Clavibacter capsici is primarily found in agricultural environments, where it is associated with various plant substrates. The organism's aerobic nature suggests that it thrives in well-oxygenated soils or plant tissues, contributing to its ecological niche. The Gram-positive nature of Clavibacter capsici signifies a thick peptidoglycan layer in its cell wall, which can influence its susceptibility to certain antibiotics and its interactions with other microorganisms in its environment. This structural feature also plays a role in its ability to form biofilms, potentially aiding in its persistence in agricultural settings. Understanding the aerobic requirements of Clavibacter capsici allows for a clearer insight into its ecological role, particularly in the rhizosphere where oxygen levels can fluctuate. Its adaptation to aerobic conditions may enhance its competitiveness against other microbial species in soil, suggesting a unique ecological strategy that could impact soil health and plant-microbe interactions. Further research into this organism could illuminate its potential roles in agricultural ecosystems, particularly in relation to plant health and soil microbiome dynamics.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter capsici
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clavibacter capsici

Accession NumberNZ_CP012574.1

Gene Summary

Adenine Count

6661 bp

Thymine Count

6499 bp

Guanine Count

13653 bp

Cytosine Count

13055 bp

Genome Length

39868 bp

Protein-coding Genes

45 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
alanine--trna ligaseAES38_RS08720Not Available-1861829 - 186448695341.5
hypothetical proteinAES38_RS08725Not Available-1864493 - 18647148064.66
30s ribosomal protein s4AES38_RS08730Not Available-1864910 - 186553923723.0
replication-associated recombination protein aAES38_RS08735Not Available-1865787 - 186719950085.4
hypothetical proteinAES38_RS08740Not Available+1867273 - 186756610009.8
duf349 domain-containing proteinAES38_RS08745Not Available+1867828 - 186906045630.4
type iv toxin-antitoxin system abiei family antitoxinAES38_RS08750Not Available+1869156 - 186976421667.3
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseAES38_RS08755Not Available-1869751 - 187200083217.5
rhodanese-like domain-containing proteinAES38_RS08760Not Available-1872119 - 187247812387.3
protein translocase subunit secfAES38_RS08765Not Available-1872475 - 187348535526.8

Displaying genes 1961 – 1970 of 3137 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites