Rhizorhabdus dicambivorans str. Ndbn-20m

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Rhizorhabdus dicambivorans str. Ndbn-20m is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This organism exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for mesophilic environments that are conducive to its metabolic activities. As a member of the genus Rhizorhabdus, this strain may be involved in complex ecological interactions, particularly in soil or rhizosphere environments, where aerobic conditions prevail. The non-sporulating trait of Rhizorhabdus dicambivorans str. Ndbn-20m indicates that it relies on vegetative growth for propagation rather than forming spores, which can be a critical survival strategy in stable environments. Its Gram-negative cell wall structure is significant as it influences the bacterium's susceptibility to antibiotics and its interaction with other microbial communities. Overall, the physiological characteristics of Rhizorhabdus dicambivorans str. Ndbn-20m suggest that it may play a role in nutrient cycling and organic matter decomposition in its native habitat, contributing to the overall health and functionality of the ecosystem. Understanding its specific ecological roles could provide insights into the dynamics of microbial communities in aerobic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus dicambivorans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizorhabdus dicambivorans str. Ndbn-20m

Accession NumberNWUF00000000.1

Gene Summary

Adenine Count

904801 bp

Thymine Count

909038 bp

Guanine Count

1719569 bp

Cytosine Count

1714086 bp

Genome Length

5247494 bp

Protein-coding Genes

4858 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
sensor histidine kinaseCOO09_08400Not Available+1764046 - 176546452347.6
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alphaCOO09_08405Not Available+1765718 - 176697746502.9
alpha-ketoacid dehydrogenase subunit betaCOO09_08410Not Available+1767114 - 176811836231.4
branched-chain alpha-keto acid dehydrogenase subunit e2COO09_08415Not Available+1768124 - 176941945466.4
yebc/pmpr family dna-binding transcriptional regulatorCOO09_08420Not Available+1769593 - 177033626382.0
type ii toxin-antitoxin system rele/pare family toxinCOO09_08425Not Available-1770333 - 177061110803.2
ribbon-helix-helix protein, copg familyCOO09_08430Not Available-1770608 - 17708779938.92
crossover junction endodeoxyribonuclease ruvcCOO09_08435Not Available+1770999 - 177149617084.9
holliday junction branch migration protein ruvaCOO09_08440Not Available+1771493 - 177209220025.4
holliday junction branch migration dna helicase ruvbCOO09_08445Not Available+1772247 - 177327837565.4

Displaying genes 1661 – 1670 of 4911 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites