Rhizorhabdus dicambivorans str. Ndbn-20m

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Rhizorhabdus dicambivorans str. Ndbn-20m is a Gram-negative, rod-shaped bacterium characterized by its aerobic metabolism and non-spore-forming nature. This organism exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for mesophilic environments that are conducive to its metabolic activities. As a member of the genus Rhizorhabdus, this strain may be involved in complex ecological interactions, particularly in soil or rhizosphere environments, where aerobic conditions prevail. The non-sporulating trait of Rhizorhabdus dicambivorans str. Ndbn-20m indicates that it relies on vegetative growth for propagation rather than forming spores, which can be a critical survival strategy in stable environments. Its Gram-negative cell wall structure is significant as it influences the bacterium's susceptibility to antibiotics and its interaction with other microbial communities. Overall, the physiological characteristics of Rhizorhabdus dicambivorans str. Ndbn-20m suggest that it may play a role in nutrient cycling and organic matter decomposition in its native habitat, contributing to the overall health and functionality of the ecosystem. Understanding its specific ecological roles could provide insights into the dynamics of microbial communities in aerobic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus dicambivorans
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizorhabdus dicambivorans str. Ndbn-20m

Accession NumberNWUF00000000.1

Gene Summary

Adenine Count

904801 bp

Thymine Count

909038 bp

Guanine Count

1719569 bp

Cytosine Count

1714086 bp

Genome Length

5247494 bp

Protein-coding Genes

4858 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
aspartyl beta-hydroxylaseCOO09_04970Not Available-1015633 - 101659834147.3
hypothetical proteinCOO09_04975Not Available-1016641 - 10168959256.26
proline hydroxylaseCOO09_04980Not Available+1016973 - 101768625767.6
hypothetical proteinCOO09_04985Not Available-1017755 - 10180159227.11
sulfotransferaseCOO09_04990Not Available-1018090 - 102008173318.4
hypothetical proteinCOO09_04995Not Available-1020215 - 1023286108532.0
hypothetical proteinCOO09_05000Not Available+1023544 - 102406518727.6
peptidaseCOO09_05005Not Available-1024103 - 102505332981.9
duf2093 domain-containing proteinCOO09_05010Not Available-1025092 - 10252897046.48
exodeoxyribonuclease vii large subunitCOO09_05015Not Available-1025306 - 102679653920.6

Displaying genes 991 – 1000 of 4911 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites