Pedobacter psychrophilus str. CCM 8644

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter psychrophilus strain CCM 8644 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 16.0°C. This psychrophilic organism is adapted to cold environments, reflecting its physiological traits that enable survival and metabolic activity at lower temperatures. The rod shape of Pedobacter psychrophilus facilitates its mobility and nutrient uptake in cold habitats, which are often nutrient-limited. As an aerobic bacterium, it relies on oxygen for its metabolic processes, which is typical for many bacteria found in cold, oxygen-rich environments, such as polar regions and deep-sea ecosystems. Given its optimal growth temperature, Pedobacter psychrophilus may play a critical role in biogeochemical cycles in cold habitats, where it could contribute to the degradation of organic matter and nutrient cycling. Its ability to thrive in low-temperature environments highlights its potential importance in understanding microbial ecology and biotechnological applications in cold environments. Overall, Pedobacter psychrophilus str. CCM 8644 exemplifies the remarkable adaptability of microorganisms to extreme conditions, underscoring the significance of studying psychrophilic bacteria in the context of climate change and ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter psychrophilus
StrainCCM 8644

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter psychrophilus str. CCM 8644


Gene Summary

Adenine Count

1351125 bp

Thymine Count

1346521 bp

Guanine Count

659669 bp

Cytosine Count

641821 bp

Genome Length

3999136 bp

Protein-coding Genes

3389 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+281 - 1803Not Available
rna helicaseA5893_16950Not Available-754 - 188742124.8
dienelactone hydrolaseA5893_16955Not Available+2081 - 296832696.9
23s ribosomal rnaNot AvailableNot Available+2186 - 5071Not Available
hypothetical proteinA5893_16960Not Available-3132 - 396531908.2
polyketide cyclaseA5893_16965Not Available-4145 - 462418270.8
hypothetical proteinA5893_16970Not Available-4782 - 518915839.1
5s ribosomal rnaNot AvailableNot Available+5213 - 5324Not Available
dihydrofolate reductaseA5893_16975Not Available-5182 - 575421593.2
hypothetical proteinA5893_16980Not Available-5751 - 618816747.1

Displaying genes 1 – 10 of 3429 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites