Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter psychrophilus |
| Strain | CCM 8644 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1351125 bp
Thymine Count
1346521 bp
Guanine Count
659669 bp
Cytosine Count
641821 bp
Genome Length
3999136 bp
Protein-coding Genes
3389 genes
Non-Coding Genes
40 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna | Not Available | Not Available | + | 281 - 1803 | Not Available |
| rna helicase | A5893_16950 | Not Available | - | 754 - 1887 | 42124.8 |
| dienelactone hydrolase | A5893_16955 | Not Available | + | 2081 - 2968 | 32696.9 |
| 23s ribosomal rna | Not Available | Not Available | + | 2186 - 5071 | Not Available |
| hypothetical protein | A5893_16960 | Not Available | - | 3132 - 3965 | 31908.2 |
| polyketide cyclase | A5893_16965 | Not Available | - | 4145 - 4624 | 18270.8 |
| hypothetical protein | A5893_16970 | Not Available | - | 4782 - 5189 | 15839.1 |
| 5s ribosomal rna | Not Available | Not Available | + | 5213 - 5324 | Not Available |
| dihydrofolate reductase | A5893_16975 | Not Available | - | 5182 - 5754 | 21593.2 |
| hypothetical protein | A5893_16980 | Not Available | - | 5751 - 6188 | 16747.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
