Colwellia sp. PAMC 20917

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Colwelliaceae

Genus

Colwellia

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyColwelliaceae
GenusColwellia
SpeciesColwellia sp. PAMC 20917
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Colwellia sp. PAMC 20917

Accession NumberNZ_CP014944.1

Gene Summary

Adenine Count

1453386 bp

Thymine Count

1456572 bp

Guanine Count

886647 bp

Cytosine Count

886709 bp

Genome Length

4683314 bp

Protein-coding Genes

3945 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
lipopolysaccharide assembly protein lapbA3Q34_RS02025Not Available-465746 - 46691545345.4
lipopolysaccharide assembly protein lapa domain-containing proteinA3Q34_RS02030Not Available-466921 - 4671638992.37
integration host factor subunit betaA3Q34_RS02035Not Available-467244 - 46753110749.1
30s ribosomal protein s1A3Q34_RS02040Not Available-467641 - 46930260924.3
(d)cmp kinaseA3Q34_RS02045Not Available-469424 - 47010424594.6
3-phosphoshikimate 1-carboxyvinyltransferaseA3Q34_RS02050Not Available-470151 - 47149447173.8
3-phosphoserine/phosphohydroxythreonine transaminaseA3Q34_RS02055Not Available-471628 - 47271639838.9
dna topoisomerase (atp-hydrolyzing) subunit aA3Q34_RS02060Not Available-473346 - 476069100800.0
duf962 domain-containing proteinA3Q34_RS02065Not Available-476274 - 47682520726.0
s8 family serine peptidaseA3Q34_RS02070Not Available-477034 - 47937380262.2

Displaying genes 411 – 420 of 4041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

178 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000686vanillateC8H7O4Chemical structure of vanillateNot available
Average167.1388Da
Monoisotopic167.0344337Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da

Displaying 1–10 of 178 metabolites