Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-packaging protein gp3 | SAMN04487898_105144 | Not Available | + | 2242959 - 2243360 | 15446.4 |
| Terminase large subunit | SAMN04487898_105145 | Not Available | + | 2243361 - 2244659 | 48914.3 |
| 1_nc_021790: phage portal protein | SAMN04487898_105146 | Not Available | + | 2244729 - 2246081 | 51125.6 |
| 1_nc_021790: phage minor capsid protein | SAMN04487898_105147 | Not Available | + | 2246113 - 2247789 | 63780.4 |
| hypothetical protein | SAMN04487898_105148 | Not Available | + | 2247802 - 2248041 | 9063.72 |
| hypothetical protein | SAMN04487898_105149 | Not Available | - | 2248043 - 2248438 | 14861.1 |
| Hypothetical protein | SAMN04487898_105150 | Not Available | - | 2248438 - 2248893 | 17471.0 |
| Gene transfer agent prohead protease | SAMN04487898_105151 | Not Available | + | 2249067 - 2249816 | 28027.9 |
| Major capsid protein | SAMN04487898_105152 | Not Available | + | 2249825 - 2250922 | 39114.6 |
| uncharacterized phage protein (possible dna packaging) | SAMN04487898_105153 | Not Available | + | 2250996 - 2251286 | 10830.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.