Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. Root318D1 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Variovorax sp. Root318D1
Accession NumberLMCQ00000000.1
Gene Summary
Adenine Count
985297 bp
Thymine Count
979533 bp
Guanine Count
1898439 bp
Cytosine Count
1882261 bp
Genome Length
5745828 bp
Protein-coding Genes
5217 genes
Non-Coding Genes
49 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein-(glutamine-n5) methyltransferase, ribosomal protein l3-specific | ASC78_20275 | Q7VXJ6 | - | 958527 - 959408 | 31528.4 |
| succinyl-diaminopimelate desuccinylase | ASC78_20280 | C5CLT2 | - | 959470 - 960645 | 41611.5 |
| type iv pili twitching motility protein pilt | ASC78_20285 | Not Available | - | 960670 - 961818 | 42136.1 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | ASC78_20290 | C5CLT4 | - | 961879 - 962712 | 29612.3 |
| succinyldiaminopimelate transaminase | ASC78_20295 | A1VDD3 | - | 962757 - 963977 | 43934.3 |
| amino acid transporter | ASC78_20300 | Not Available | - | 964028 - 964675 | 22453.1 |
| n-acetylglutamate synthase | ASC78_20305 | Q8XZZ5 | - | 964708 - 966054 | 49431.6 |
| atp-dependent helicase | ASC78_20310 | P43329 | + | 966204 - 970073 | 144455.0 |
| hypothetical protein | ASC78_20315 | Not Available | - | 970145 - 970339 | 7099.14 |
| aminotransferase | ASC78_20320 | P77806 | - | 970419 - 971597 | 42399.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.