Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. Root318D1 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Variovorax sp. Root318D1
Accession NumberLMCQ00000000.1
Gene Summary
Adenine Count
985297 bp
Thymine Count
979533 bp
Guanine Count
1898439 bp
Cytosine Count
1882261 bp
Genome Length
5745828 bp
Protein-coding Genes
5217 genes
Non-Coding Genes
49 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | ASC78_02450 | Not Available | - | 529076 - 529762 | 25684.8 |
| dihydropyrimidinase | ASC78_02455 | Q45515 | - | 529833 - 531287 | 53100.8 |
| abc transporter permease | ASC78_02460 | P0AFT3 | - | 531301 - 532029 | 26735.2 |
| amino acid abc transporter | ASC78_02465 | P52626 | - | 532068 - 532898 | 29796.5 |
| 4-hydroxy-tetrahydrodipicolinate synthase | ASC78_02470 | A0LEA7 | - | 532962 - 533858 | 32810.1 |
| fad-dependent oxidoreductase | ASC78_02475 | Q59160 | + | 533964 - 536912 | 103187.0 |
| peptidase m20 | ASC78_02480 | Not Available | + | 536917 - 538194 | 45437.3 |
| hypothetical protein | ASC78_02485 | P0AAR6 | - | 538171 - 538545 | 13718.3 |
| rna polymerase subunit sigma-70 | ASC78_02490 | Not Available | - | 538655 - 539227 | 21021.2 |
| hypothetical protein | ASC78_02495 | Not Available | - | 539224 - 539439 | 7335.51 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.