Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. Root318D1 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Variovorax sp. Root318D1
Accession NumberLMCQ00000000.1
Gene Summary
Adenine Count
985297 bp
Thymine Count
979533 bp
Guanine Count
1898439 bp
Cytosine Count
1882261 bp
Genome Length
5745828 bp
Protein-coding Genes
5217 genes
Non-Coding Genes
49 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 4-oxalocrotonate decarboxylase | ASC78_01055 | Q9KWS3 | + | 230608 - 231375 | 27266.8 |
| 4-oxalocrotonate tautomerase | ASC78_01060 | P49172 | + | 231379 - 231633 | 9207.11 |
| acetaldehyde dehydrogenase (acetylating) | ASC78_01065 | B4EFI8 | + | 231647 - 232606 | 33571.9 |
| 4-hydroxy-2-oxovalerate aldolase | ASC78_01070 | Q397Q9 | + | 232603 - 233664 | 37668.0 |
| abc transporter substrate-binding protein | ASC78_01075 | Not Available | - | 233667 - 234644 | 33898.1 |
| laci family transcriptional regulator | ASC78_01080 | Not Available | - | 234694 - 235665 | 33954.3 |
| dihydrofolate reductase | ASC78_01085 | Not Available | - | 235719 - 236672 | 33398.6 |
| citrate synthase | ASC78_01090 | Not Available | + | 236805 - 237965 | 40886.2 |
| cupin | ASC78_01095 | Not Available | - | 237991 - 238371 | 14032.6 |
| hypothetical protein | ASC78_01100 | Not Available | + | 238721 - 239620 | 33835.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.