Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Shimia abyssi str. DSM 100673
Accession NumberPYGJ00000000.1
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| osmc-like protein | CLV88_1368 | Not Available | + | 4699964 - 4700482 | 18588.1 |
| ubiquinone/menaquinone biosynthesis c-methylase ubie | CLV88_1369 | Not Available | + | 4700482 - 4701309 | 30017.3 |
| hypothetical protein | CLV88_13610 | Not Available | - | 4701490 - 4701702 | 7417.19 |
| integrase | CLV88_13611 | Not Available | - | 4701699 - 4702931 | 46038.7 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_1371 | Not Available | - | 4703331 - 4704179 | 31474.1 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_1372 | Not Available | - | 4704181 - 4705107 | 35287.2 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_1373 | Not Available | - | 4705248 - 4706531 | 47467.6 |
| iclr family transcriptional regulator | CLV88_1374 | Not Available | + | 4706820 - 4707614 | 29160.7 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_1375 | Not Available | + | 4707611 - 4708669 | 38583.7 |
| site-specific recombinase xerc | CLV88_1381 | Not Available | - | 4708784 - 4709857 | 40455.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.