Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ctp synthase | CLV88_101187 | Not Available | + | 186135 - 187778 | 60847.5 |
| glutamate/tyrosine decarboxylase-like plp-dependent enzyme | CLV88_101188 | Not Available | + | 188036 - 189493 | 52999.1 |
| hypothetical protein | CLV88_101189 | Not Available | + | 189539 - 190204 | 23620.4 |
| uncharacterized protein (duf1330 family) | CLV88_101190 | Not Available | + | 190296 - 190589 | 10782.6 |
| putative tellurite resistance protein b-like protein | CLV88_101191 | Not Available | + | 190586 - 191017 | 15659.6 |
| putative tellurite resistance protein b-like protein | CLV88_101192 | Not Available | + | 191059 - 191499 | 16233.2 |
| amino acid abc transporter atp-binding protein (paat family) | CLV88_101193 | Not Available | + | 191593 - 192438 | 31032.2 |
| amino acid abc transporter substrate-binding protein (paat family) | CLV88_101194 | Not Available | + | 192466 - 193182 | 25167.6 |
| amino acid abc transporter membrane protein 1 (paat family) | CLV88_101195 | Not Available | + | 193316 - 194122 | 30091.1 |
| amino acid abc transporter membrane protein 2 (paat family) | CLV88_101196 | Not Available | + | 194119 - 194925 | 30604.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
