Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_101167 | Not Available | - | 166409 - 167710 | 47103.4 |
| amino acid/amide abc transporter substrate-binding protein (haat family) | CLV88_101168 | Not Available | + | 167930 - 169267 | 47078.2 |
| amino acid/amide abc transporter membrane protein 1 (haat family) | CLV88_101169 | Not Available | + | 169454 - 170485 | 37295.8 |
| amino acid/amide abc transporter membrane protein 2 (haat family) | CLV88_101170 | Not Available | + | 170488 - 171690 | 43327.3 |
| amino acid/amide abc transporter atp-binding protein 1 (haat family) | CLV88_101171 | Not Available | + | 171703 - 172458 | 27605.6 |
| amino acid/amide abc transporter atp-binding protein 2 (haat family) | CLV88_101172 | Not Available | + | 172473 - 173228 | 27704.3 |
| acetyl-coenzyme a synthetase | CLV88_101173 | Not Available | + | 173352 - 175301 | 71675.6 |
| threonine/homoserine efflux transporter rhta | CLV88_101174 | Not Available | + | 175481 - 176389 | 32587.0 |
| thiamine diphosphokinase | CLV88_101175 | Not Available | - | 176346 - 177065 | 25573.3 |
| hypothetical protein | CLV88_101176 | Not Available | + | 177168 - 179489 | 84180.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
