Dermacoccus sp. PE3

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Dermacoccaceae

Genus

Dermacoccus

Description

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermacoccaceae
GenusDermacoccus
SpeciesDermacoccus sp. PE3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dermacoccus sp. PE3

Accession NumberLDCM00000000.1

Gene Summary

Adenine Count

488752 bp

Thymine Count

486160 bp

Guanine Count

1046121 bp

Cytosine Count

1053954 bp

Genome Length

3074987 bp

Protein-coding Genes

2562 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
mfs transporterAA983_00005A0R5K5+187 - 168651362.9
5s ribosomal rnaNot AvailableNot Available+199 - 316Not Available
tetr family transcriptional regulatorAA983_00010Not Available+1704 - 227620668.4
membrane proteinAA983_00015O54101+2273 - 260211855.9
16s ribosomal rnaNot AvailableNot Available+3340 - 4871Not Available
alpha/beta hydrolaseAA983_00020Not Available-4049 - 479827082.2
atp/gtp-binding proteinAA983_00025Not Available-4828 - 512711497.6
3-hydroxyacyl-coa dehydrogenaseAA983_00030P52041-5127 - 680957687.9
hypothetical proteinAA983_00040A0JY58+7715 - 841025452.7
hypothetical proteinAA983_00045Not Available-8421 - 875011555.9

Displaying genes 1 – 10 of 2615 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

247 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0010887(4R,5S)-dethiobiotinC10H18N2O3Chemical structure of (4R,5S)-dethiobiotin533-48-2
Average214.2615Da
Monoisotopic214.1317425Da
BASm0011014(4S,8R)-2,13,16,20-tetrahydroxy-7,9-dioxapentacyclo[10.8.0.0(3,10).0(4,8).0(14,19)]icosa-1(12),2,5,10,13,16,19-heptaen-18-oneC18H12O7Chemical structure of (4S,8R)-2,13,16,20-tetrahydroxy-7,9-dioxapentacyclo[10.8.0.0(3,10).0(4,8).0(14,19)]icosa-1(12),2,5,10,13,16,19-heptaen-18-oneNot available
Average340.287Da
Monoisotopic340.0583027Da
BASm0011015(4S,8R,16R)-2,13,16,20-tetrahydroxy-7,9-dioxapentacyclo[10.8.0.0(3,10).0(4,8).0(14,19)]icosa-1(12),2,5,10,13,19-hexaen-18-oneC18H14O7Chemical structure of (4S,8R,16R)-2,13,16,20-tetrahydroxy-7,9-dioxapentacyclo[10.8.0.0(3,10).0(4,8).0(14,19)]icosa-1(12),2,5,10,13,19-hexaen-18-oneNot available
Average342.303Da
Monoisotopic342.0739528Da
BASm0011145(3Z,5E)-dodecadienoyl-CoAC33H50N7O17P3SChemical structure of (3Z,5E)-dodecadienoyl-CoANot available
Average941.78Da
Monoisotopic941.221869666Da
BASm0011146(3Z,5E)-dodecadienoateC12H19O2Chemical structure of (3Z,5E)-dodecadienoateNot available
Average195.283Da
Monoisotopic195.139053432Da
BASm00111563-hydroxydodecanoyl-CoAC33H54N7O18P3SChemical structure of 3-hydroxydodecanoyl-CoANot available
Average961.81Da
Monoisotopic961.248084414Da
BASm0012597(6R)-10-formyltetrahydrofolateC20H21N7O7Chemical structure of (6R)-10-formyltetrahydrofolateNot available
Average471.431Da
Monoisotopic471.151343204Da

Displaying 241–247 of 247 metabolites