Dermacoccus sp. PE3

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Dermacoccaceae

Genus

Dermacoccus

Description

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermacoccaceae
GenusDermacoccus
SpeciesDermacoccus sp. PE3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dermacoccus sp. PE3

Accession NumberLDCM00000000.1

Gene Summary

Adenine Count

488752 bp

Thymine Count

486160 bp

Guanine Count

1046121 bp

Cytosine Count

1053954 bp

Genome Length

3074987 bp

Protein-coding Genes

2562 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
xre family transcriptional regulatorAA983_09370Not Available+1999662 - 200117355508.5
30s ribosomal protein s16AA983_09375Q0S2C8+2001400 - 200188517618.8
hypothetical proteinAA983_09380P0A4Q4+2001891 - 20021338748.47
hypothetical proteinAA983_09385Not Available+2002300 - 200268613862.2
ribosome maturation factor rimmAA983_09395A0JXU0+2003275 - 200382019562.9
transposon tnseAA983_09400A1R7G3+2003824 - 200500543387.9
50s ribosomal protein l19AA983_09405A6W7V1+2005284 - 200564913442.5
ribonuclease hiiAA983_09415A6W7V4+2006353 - 200709626031.3
protein often found in actinomycetes clustered with signal peptidase and/or rnasehiiAA983_09420P9WL26+2007093 - 200741312630.8
hypothetical proteinAA983_09425B0REN8+2007541 - 200793915039.9

Displaying genes 1681 – 1690 of 2615 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

247 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da

Displaying 1–10 of 247 metabolites