Methanocalculus sp. 52_23

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanomicrobiales

Family

Methanocalculaceae

Genus

Methanocalculus

Description

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanomicrobiales
FamilyMethanocalculaceae
GenusMethanocalculus
SpeciesMethanocalculus sp. 52_23
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanocalculus sp. 52_23

LGGJ00000000.1

Gene Summary

Adenine Count

471480 bp

Thymine Count

477863 bp

Guanine Count

510663 bp

Cytosine Count

513781 bp

Genome Length

1973787 bp

Protein-coding Genes

2205 genes

Non-Coding Genes

34 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transcriptional regulator, arsr familyXD88_0011Not Available+11095 - 1185628312.6
secreted protein-like proteinXD88_0012Not Available+11916 - 1234115506.3
hypothetical proteinXD88_0013Not Available-12511 - 126364456.59
metal dependent phosphohydrolaseXD88_0014Q58426-12597 - 1346931888.5
uncharacterized proteinXD88_0015Not Available+13606 - 138338123.8
uvrabc system protein bXD88_0016Q8PRZ9-13839 - 1576473774.3
uvrabc system protein cXD88_0017Q8TKS2-15761 - 1731158138.3
uvrabc system protein aXD88_0018O26543-17308 - 20112103541.0
hypothetical proteinXD88_0019Not Available-20161 - 203316682.98
iron-sulfur flavoproteinXD88_0020Not Available+20414 - 2108824153.3

Displaying genes 11 – 20 of 2239 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

121 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 121 metabolites