Gemmata sp. SH-PL17

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Gemmatales

Family

Gemmataceae

Genus

Gemmata

Description

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderGemmatales
FamilyGemmataceae
GenusGemmata
SpeciesGemmata sp. SH-PL17
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Gemmata sp. SH-PL17
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gemmata sp. SH-PL17

NZ_CP011271.1

Gene Summary

Adenine Count

1621476 bp

Thymine Count

1614577 bp

Guanine Count

2899750 bp

Cytosine Count

2909621 bp

Genome Length

9045424 bp

Protein-coding Genes

7565 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dnaa atpase domain-containing proteinVT84_RS00005A0L3I7+1 - 158157387.5
class i sam-dependent methyltransferaseVT84_RS00010P70976+1614 - 238127841.0
sterol desaturase family proteinVT84_RS00015Not Available-2303 - 319634081.2
hypothetical proteinVT84_RS00020Not Available-3219 - 34648474.29
hypothetical proteinVT84_RS00025Not Available-3529 - 393313698.6
wd40 repeat domain-containing proteinVT84_RS00030Not Available-4014 - 635383682.0
udp-glucuronic acid decarboxylase family proteinVT84_RS00035Q8NBZ7+6895 - 783035129.1
acyl-coa thioesteraseVT84_RS00040Not Available-7837 - 827415977.6
nucleoside-diphosphate kinaseVT84_RS00045Q3AFJ7+8845 - 929116238.6
hypothetical proteinVT84_RS00050Not Available+9436 - 972610243.3

Displaying genes 1 – 10 of 7658 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

259 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da

Displaying 1–10 of 259 metabolites