Actinobacteria bacterium OK006

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Family

Genus

Description

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Actinobacteria bacterium OK006

LJCU00000000.1

Gene Summary

Adenine Count

1779167 bp

Thymine Count

1784269 bp

Guanine Count

4191556 bp

Cytosine Count

4177674 bp

Genome Length

11932666 bp

Protein-coding Genes

10849 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+13 - 128Not Available
16s ribosomal rnaNot AvailableNot Available+16 - 1529Not Available
hypothetical proteinOK006_9073Not Available-1 - 2718880.89
hypothetical proteinOK006_9074Not Available+542 - 148932171.5
protein of unknown function duf574OK006_9075Not Available+1946 - 275829759.4
diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)OK006_9076Not Available+2755 - 489077597.2
3-oxoacyl-(acyl-carrier-protein) reductaseOK006_9077P0AEK2+4972 - 575125875.9
transcriptional regulator, lysr familyOK006_9078P0ACQ6-5786 - 666731928.9
succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 familyOK006_9079Not Available+6787 - 745824909.7
succinate dehydrogenase or fumarate reductase, flavoprotein subunitOK006_9080P08065+7460 - 941872463.1

Displaying genes 1 – 10 of 10930 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

530 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 530 metabolites