Corynebacterium oculi str. NML 130210

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Corynebacteriaceae

Genus

Corynebacterium

Description

Corynebacterium oculi str. NML 130210 is a Gram-positive, rod-shaped bacterium characterized by its distinct cellular morphology and staining properties. This species belongs to the genus Corynebacterium, which is known for its club-shaped cells and pleomorphic nature. As a member of the Actinobacteria phylum, C. oculi str. NML 130210 may exhibit typical features of this group, such as a high G+C content in its DNA, which is often associated with various metabolic capabilities. The Gram-positive nature of this organism suggests the presence of a thick peptidoglycan layer in its cell wall, which is a hallmark of this classification and may influence its susceptibility to antibiotics and environmental conditions. The rod shape of C. oculi str. NML 130210 is indicative of its potential for specific arrangements and growth patterns, which can be relevant in understanding its behavior in various environments. Given its classification and structural characteristics, C. oculi str. NML 130210 may play a role in the microbial communities associated with specific ecological niches, particularly those related to animal hosts, as suggested by its name. Further exploration of its interactions within these communities could provide insights into its biological significance and potential contributions to the overall health of its habitat.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyCorynebacteriaceae
GenusCorynebacterium
SpeciesCorynebacterium oculi
StrainNML 130210

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Image of Corynebacterium oculi str. NML 130210
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Corynebacterium oculi str. NML 130210


Gene Summary

Adenine Count

425539 bp

Thymine Count

424051 bp

Guanine Count

784302 bp

Cytosine Count

779981 bp

Genome Length

2413873 bp

Protein-coding Genes

2313 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+55950 - 55984Not Available
IntegraseCocul_00063B6IPE2+56294 - 5686920723.1
Hypothetical proteinCocul_00064Not Available-56866 - 5810743325.3
Hypothetical proteinCocul_00065Not Available-58104 - 5966658386.8
Putative tape measure proteinCocul_00066Not Available-59657 - 6180471682.5
Hypothetical proteinCocul_00067Not Available-61925 - 6222110945.6
Major tail proteinCocul_00068Not Available-62620 - 6306315527.2
Hypothetical proteinCocul_00069Not Available-63073 - 6342912587.1
Hypothetical proteinCocul_00070Not Available-63433 - 6374711020.3
Caudovirus prohead protease family proteinCocul_00071Not Available-63747 - 6531856683.9

Displaying genes 1 – 10 of 2381 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

203 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 203 metabolites