Lacimicrobium alkaliphilum str. KCTC 32984

curved/spiralfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Alteromonadaceae

Genus

Lacimicrobium

Description

Lacimicrobium alkaliphilum str. KCTC 32984 is a Gram-negative, curved to spiral-shaped bacterium that exhibits facultative aerobic and anaerobic metabolic capabilities. This microorganism thrives optimally at a temperature of 29.0°C, indicating a mesophilic nature, which may suggest its adaptation to moderately warm environments. The curved or spiral morphology of Lacimicrobium alkaliphilum str. KCTC 32984 could imply a unique motility mechanism, potentially allowing it to navigate complex environments, such as alkaline habitats where it is likely to be found. The facultative lifestyle of this bacterium enables it to utilize various electron acceptors, which may confer an ecological advantage in fluctuating oxygen conditions, allowing it to survive in both oxygen-rich and oxygen-depleted ecosystems. Given its specific traits, Lacimicrobium alkaliphilum str. KCTC 32984 may play a significant role in biogeochemical cycles, particularly in alkaline environments, where it could contribute to the degradation of organic matter or the cycling of nutrients. This adaptability not only underscores the diverse metabolic pathways present within this strain but also highlights its potential ecological significance in maintaining the stability of alkaline ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusLacimicrobium
SpeciesLacimicrobium alkaliphilum
StrainKCTC 32984

Profile

Physiology
Gram staining propertiesGram-negative
Shapecurved/spiral
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lacimicrobium alkaliphilum str. KCTC 32984


Gene Summary

Adenine Count

1082721 bp

Thymine Count

1079409 bp

Guanine Count

1109757 bp

Cytosine Count

1106948 bp

Genome Length

4378835 bp

Protein-coding Genes

3864 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
type ii toxin-antitoxin system rele/pare family toxinAT746_RS00060Not Available-11369 - 1166211772.9
type ii toxin-antitoxin system pard family antitoxinAT746_RS00065P58092-11655 - 118978714.21
gfa family proteinAT746_RS00070Not Available-12091 - 1251015286.1
glutamine--fructose-6-phosphate transaminase (isomerizing)AT746_RS00075Q5QZH5-12569 - 1440167018.0
deor/glpr family dna-binding transcription regulatorAT746_RS00080P0ACK4-14405 - 1518128792.7
bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmuAT746_RS00085Q15P09-15626 - 1698448559.4
sensor domain-containing diguanylate cyclaseAT746_RS00090Q8X8Q3+17132 - 1853853875.9
dmt family transporterAT746_RS00095Not Available-18569 - 1947132139.4
methylated-dna--[protein]-cysteine s-methyltransferaseAT746_RS00100P11742-19472 - 1993617077.7
alka n-terminal domain-containing proteinAT746_RS00105Not Available-19933 - 2124649461.8

Displaying genes 11 – 20 of 3935 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

243 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 243 metabolites