Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter xixiisoli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1550273 bp
Thymine Count
1549681 bp
Guanine Count
942263 bp
Cytosine Count
932424 bp
Genome Length
4974702 bp
Protein-coding Genes
4166 genes
Non-Coding Genes
48 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| outer membrane transport energization protein exbb | SAMN06297358_0008 | Not Available | - | 10080 - 10790 | 25904.6 |
| sporulation related domain-containing protein | SAMN06297358_0009 | Not Available | - | 10797 - 12482 | 63856.6 |
| hypothetical protein | SAMN06297358_0010 | Not Available | - | 12512 - 14218 | 63694.5 |
| tetratricopeptide repeat-containing protein | SAMN06297358_0011 | Not Available | - | 14230 - 17247 | 115322.0 |
| hypothetical protein | SAMN06297358_0012 | Not Available | - | 17551 - 17862 | 12427.1 |
| aspartate carbamoyltransferase | SAMN06297358_0013 | Not Available | - | 17866 - 18801 | 34315.0 |
| pyrimidine operon attenuation protein / uracil phosphoribosyltransferase | SAMN06297358_0014 | Not Available | - | 18872 - 19426 | 21090.6 |
| d-alanine transaminase/branched-chain amino acid aminotransferase | SAMN06297358_0015 | Not Available | - | 19897 - 20721 | 30870.3 |
| predicted thiol-disulfide oxidoreductase yuxk, dcc family | SAMN06297358_0016 | Not Available | + | 20867 - 21268 | 15474.0 |
| hypothetical protein | SAMN06297358_0017 | Not Available | - | 21297 - 21536 | 8579.17 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.