Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| predicted arabinose efflux permease, mfs family | SAMN05444000_101203 | Not Available | + | 218007 - 219209 | 42451.0 |
| ca-activated chloride channel family protein | SAMN05444000_101204 | Not Available | - | 219259 - 221175 | 67898.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444000_101205 | Not Available | - | 221172 - 221714 | 20306.9 |
| succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase | SAMN05444000_101206 | Not Available | - | 221828 - 223303 | 52332.5 |
| acetyl esterase/lipase | SAMN05444000_101207 | Not Available | + | 223404 - 224195 | 28627.9 |
| choline dehydrogenase | SAMN05444000_101208 | Not Available | + | 224192 - 225775 | 57105.3 |
| gst-like protein | SAMN05444000_101209 | Not Available | - | 225777 - 226649 | 32684.3 |
| alanine or glycine:cation symporter, agcs family | SAMN05444000_101210 | Not Available | - | 226807 - 228309 | 52833.4 |
| nucleotide-binding universal stress protein, uspa family | SAMN05444000_101211 | Not Available | - | 228355 - 228789 | 15510.8 |
| atp-dependent rna helicase dead | SAMN05444000_101212 | Not Available | + | 229446 - 231446 | 71996.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.