Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| n-terminal double-transmembrane domain-containing protein | SAMN05444000_101173 | Not Available | + | 181219 - 183966 | 98287.3 |
| hypothetical protein | SAMN05444000_101174 | Not Available | + | 183963 - 186005 | 74061.2 |
| phosphoglycerate mutase | SAMN05444000_101175 | Not Available | + | 186109 - 187626 | 53814.5 |
| septal ring factor envc, activator of murein hydrolases amia and amib | SAMN05444000_101176 | Not Available | + | 187626 - 188762 | 40140.1 |
| carboxyl-terminal processing protease | SAMN05444000_101177 | Not Available | + | 188766 - 190097 | 47593.2 |
| putative (di)nucleoside polyphosphate hydrolase | SAMN05444000_101178 | Not Available | + | 190245 - 190727 | 18704.1 |
| multidrug efflux pump subunit acrb | SAMN05444000_101179 | Not Available | - | 190761 - 193886 | 111888.0 |
| rnd family efflux transporter, mfp subunit | SAMN05444000_101180 | Not Available | - | 193883 - 195232 | 48398.5 |
| hypothetical protein | SAMN05444000_101181 | Not Available | - | 195308 - 195799 | 17853.6 |
| predicted ferric reductase | SAMN05444000_101182 | Not Available | - | 195915 - 197174 | 46424.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.