Campylobacter lari RM16712

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter lari RM16712 is a Gram-negative bacterium characterized by its distinct spirilla shape and ability to form chains or exist as single cells. This microbe is classified as microaerophilic, indicating that it thrives in environments with reduced oxygen levels, which is a notable adaptation for survival in various habitats. C. lari RM16712 has been isolated from multiple habitats, suggesting a versatile ecological niche that may contribute to its adaptability and potential interactions with other microbial communities. The microaerophilic requirement implies that this organism may play a specific role in ecosystems where oxygen levels fluctuate, such as in certain aquatic environments or within the gastrointestinal tracts of animals. Understanding the traits of C. lari RM16712 enhances our knowledge of the ecological roles that Campylobacter species may fulfill, particularly in relation to their adaptation to low-oxygen environments. This insight underscores the importance of studying microbial diversity in various habitats to uncover the functional contributions of such organisms to their ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter lari
StrainRM16712

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Campylobacter lari RM16712
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter lari RM16712


Gene Summary

Adenine Count

552112 bp

Thymine Count

547534 bp

Guanine Count

233542 bp

Cytosine Count

231821 bp

Genome Length

1565009 bp

Protein-coding Genes

1556 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaUPTC16712_RS00005Not Available+1 - 132950858.8
dna polymerase iii subunit betaUPTC16712_RS00010Not Available+1462 - 252941082.8
dna topoisomerase (atp-hydrolyzing) subunit bUPTC16712_RS00015Not Available+2539 - 485787261.0
zeta toxin family proteinUPTC16712_RS08445Not Available+4865 - 539220647.3
urease subunit betaUPTC16712_RS00025Not Available+5440 - 611125368.6
urease subunit alphaUPTC16712_RS00030Not Available+6108 - 780561430.7
urease accessory protein ureeUPTC16712_RS00035Not Available+7805 - 827218572.9
urease accessory protein urefUPTC16712_RS00040Not Available+8275 - 894325937.4
urease accessory protein uregUPTC16712_RS00045Not Available+8954 - 955322007.9
urease accessory protein uredUPTC16712_RS00050Not Available+9555 - 1030729534.5

Displaying genes 1 – 10 of 1611 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

479 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da

Displaying 1–10 of 479 metabolites