Methanosarcina horonobensis HB-1 = JCM 15518

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina horonobensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanosarcina horonobensis HB-1 = JCM 15518

Accession NumberNZ_CP009516.1

Gene Summary

Adenine Count

1463604 bp

Thymine Count

1481764 bp

Guanine Count

1033986 bp

Cytosine Count

1039253 bp

Genome Length

5018607 bp

Protein-coding Genes

4466 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
abc transporter atp-binding proteinMSHOH_RS18820C0SP98+4324069 - 432476725779.6
dihydromethanopterin reductase (acceptor)MSHOH_RS18825Q8PVV3-4324832 - 432555126517.1
duf447 domain-containing proteinMSHOH_RS18830Not Available-4325621 - 432625923763.5
triphosphoribosyl-dephospho-coa synthaseMSHOH_RS18835Not Available-4326256 - 432731138596.5
methanogenesis marker 9 domain-containing proteinMSHOH_RS18840Q57579-4327298 - 432843741600.4
geranylgeranyl reductase family proteinMSHOH_RS18845O29786-4329303 - 433047243935.7
nad(p)/fad-dependent oxidoreductaseMSHOH_RS18850P96800-4330816 - 433194041447.9
nad(p)/fad-dependent oxidoreductaseMSHOH_RS18855Not Available-4331962 - 433296037889.5
duf116 domain-containing proteinMSHOH_RS18860Not Available-4333215 - 433384423787.4
duf116 domain-containing proteinMSHOH_RS18865Q58541-4333837 - 433447224149.1

Displaying genes 3931 – 3940 of 4535 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

172 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001140cyclohexyl isocyanideC7H11NChemical structure of cyclohexyl isocyanideNot available
Average109.1689Da
Monoisotopic109.089149357Da

Displaying 1–10 of 172 metabolites