Methanosarcina sp. MTP4

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina sp. MTP4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanosarcina sp. MTP4

Accession NumberNZ_CP009505.1

Gene Summary

Adenine Count

1142783 bp

Thymine Count

1134348 bp

Guanine Count

966716 bp

Cytosine Count

967621 bp

Genome Length

4211468 bp

Protein-coding Genes

3494 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
winged helix-turn-helix domain-containing proteinMSMTP_RS16855G7WMP6-4008120 - 400888429314.2
helicase hera domain-containing proteinMSMTP_RS20105Not Available+4009314 - 401077153174.5
3-isopropylmalate dehydratase small subunitMSMTP_RS16865Q8PWT6+4011076 - 401156417926.2
isocitrate/isopropylmalate dehydrogenase family proteinMSMTP_RS16870Q47SB4+4011713 - 401284041266.1
duf190 domain-containing proteinMSMTP_RS16875O66758+4013050 - 401335511289.0
methyltransferase domain-containing proteinMSMTP_RS16885Q923W1+4013679 - 401471939154.4
alanine--trna ligaseMSMTP_RS16890Q8TU79-4014881 - 4017655102966.0
yhby family rna-binding proteinMSMTP_RS16895Not Available-4018396 - 40186569745.94
winged helix-turn-helix domain-containing proteinMSMTP_RS16900Not Available+4019010 - 401980131067.6
winged helix-turn-helix domain-containing proteinMSMTP_RS16905Not Available+4020323 - 402111730721.2

Displaying genes 3381 – 3390 of 3557 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

175 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da

Displaying 1–10 of 175 metabolites