Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase domain-containing protein | SHLA_16c000460 | Not Available | + | 720105 - 721184 | 38365.1 |
| fha domain-containing protein | SHLA_16c000470 | Not Available | + | 721297 - 722022 | 25068.4 |
| type vi secretion lipoprotein, vc_a0113 family | SHLA_16c000480 | Not Available | + | 722019 - 722579 | 20084.6 |
| type vi secretion protein, vc_a0114 family | SHLA_16c000490 | Not Available | + | 722654 - 723985 | 48155.2 |
| type iv / vi secretion system protein, dotu family | SHLA_16c000500 | Not Available | + | 723996 - 725438 | 52024.1 |
| hypothetical protein | SHLA_16c000510 | Not Available | + | 725435 - 727222 | 65139.5 |
| type vi secretion protein icmf | SHLA_16c000520 | Not Available | + | 727219 - 730734 | 127639.0 |
| type vi secretion protein, vc_a0110 family | SHLA_16c000530 | Not Available | + | 730831 - 732666 | 67346.6 |
| type vi secretion protein, vc_a0111 family | SHLA_16c000540 | Not Available | + | 732630 - 733721 | 39661.6 |
| methylase | SHLA_16c000550 | Not Available | + | 733840 - 735378 | 55837.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.