Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion protein, evpb/vc_a0108 family | SHLA_16c000360 | Not Available | - | 708570 - 710063 | 55092.1 |
| type vi secretion protein, vc_a0107 family | SHLA_16c000370 | Not Available | - | 710068 - 710571 | 18909.7 |
| type vi secretion-associated protein, impa family | SHLA_16c000380 | Not Available | - | 710614 - 711753 | 40484.4 |
| hypothetical protein | SHLA_16c000390 | Not Available | - | 711963 - 712577 | 21675.8 |
| hypothetical protein | SHLA_16c000400 | Not Available | - | 712640 - 714676 | 74518.8 |
| hypothetical protein | SHLA_16c000410 | Not Available | - | 714826 - 715302 | 16847.6 |
| type vi secretion atpase, clpv1 family | SHLA_16c000420 | Not Available | - | 715377 - 718091 | 98251.8 |
| anti-anti-sigma factor | SHLA_16c000430 | Not Available | - | 718235 - 718564 | 11523.0 |
| anti-sigma regulatory factor (ser/thr protein kinase) | SHLA_16c000440 | Not Available | + | 718698 - 719726 | 35489.3 |
| hypothetical protein | SHLA_16c000450 | Not Available | + | 719723 - 720103 | 12618.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.