Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| amine acid abc transporter, permease protein his/glu/gln/arg/opine family | SHLA_8c000030 | Not Available | - | 6962161 - 6962856 | 25529.0 |
| amine acid abc transporter, permease protein his/glu/gln/arg/opine family | SHLA_8c000040 | Not Available | - | 6962856 - 6963569 | 25126.4 |
| sarcosine oxidase subunit beta | SHLA_8c000050 | Not Available | - | 6963566 - 6964723 | 40887.6 |
| opine oxidase subunit a | SHLA_8c000060 | Not Available | - | 6964716 - 6966215 | 52310.6 |
| sarcosine oxidase subunit alpha | SHLA_8c000070 | Not Available | - | 6966212 - 6966517 | 10693.0 |
| abc-type amino acid transport system periplasmic component | SHLA_8c000080 | Not Available | - | 6966594 - 6967442 | 29891.9 |
| lysr family transcriptional regulator | SHLA_8c000090 | Not Available | + | 6967666 - 6968463 | 29162.5 |
| hth-type transcriptional repressor cytr | SHLA_8c000100 | Not Available | + | 6968592 - 6969689 | 39723.4 |
| abc-type sugar transport system periplasmic component rbsb | SHLA_8c000110 | Not Available | + | 6969840 - 6970790 | 33084.8 |
| putative ribose/galactose/methyl galactoside import atp-binding protein 1 | SHLA_8c000120 | Not Available | + | 6970863 - 6972380 | 54656.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.