Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative conjugal transfer protein trbb | SHLA_14c000760 | Not Available | + | 419447 - 420442 | 34874.0 |
| type iv secretory pathway, virb2 component | SHLA_14c000770 | Not Available | + | 420439 - 420771 | 11549.4 |
| conjugal transfer protein trbb | SHLA_14c000780 | Not Available | + | 420771 - 421052 | 9839.31 |
| conjugal transfer protein trbe | SHLA_14c000790 | Not Available | + | 421063 - 423555 | 90886.7 |
| p-type conjugative transfer protein trbj | SHLA_14c000800 | Not Available | + | 423552 - 424325 | 27333.2 |
| conjugative transfer region protein trbk | SHLA_14c000810 | Not Available | + | 424340 - 424627 | 10026.0 |
| p-type conjugative transfer protein trbl | SHLA_14c000820 | Not Available | + | 424630 - 426015 | 45365.9 |
| conjugal transfer protein trbf | SHLA_14c000830 | Not Available | + | 426012 - 426701 | 25723.4 |
| hypothetical protein | SHLA_14c000840 | Not Available | - | 426707 - 427084 | 13910.6 |
| putative conjugal transfer protein trbg | SHLA_14c000850 | Not Available | + | 427157 - 428098 | 33479.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.