Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| replication protein repc | SHLA_42c000120 | Not Available | - | 6746393 - 6747607 | 44138.0 |
| plasmid partitioning protein repb | SHLA_42c000130 | Not Available | - | 6747761 - 6748711 | 35108.1 |
| plasmid partitioning protein repa | SHLA_42c000140 | Not Available | - | 6748708 - 6749667 | 35833.0 |
| hypothetical protein | SHLA_42c000150 | Not Available | - | 6750303 - 6750659 | 12625.5 |
| hypothetical protein | SHLA_42c000160 | Not Available | + | 6750755 - 6751294 | 19928.6 |
| transglycosylase | SHLA_42c000170 | Not Available | + | 6751297 - 6751983 | 24464.9 |
| type iv secretory pathway, virb2 component | SHLA_42c000180 | Not Available | + | 6751980 - 6752279 | 10585.4 |
| type iv secretory pathway, virb3 component | SHLA_42c000190 | Not Available | + | 6752284 - 6752625 | 12643.5 |
| type iv secretion/conjugal transfer atpase, virb4 family | SHLA_42c000200 | Not Available | + | 6752618 - 6754999 | 88550.5 |
| p-type dna transfer protein virb5 | SHLA_42c000210 | Not Available | + | 6754999 - 6755697 | 25381.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.