Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative succinate dehydrogenase, putative fumarate reductase, putative fad requiring protein | SHLA_2c002440 | Not Available | - | 252604 - 254025 | 51338.5 |
| hypothetical protein | SHLA_124c000020 | Not Available | + | 254785 - 254973 | 7176.54 |
| endoglucanase egl | SHLA_124c000030 | Not Available | - | 255068 - 256066 | 35946.2 |
| abc transporter, atp-binding protein | SHLA_124c000040 | Not Available | + | 256374 - 258182 | 65692.5 |
| dna polymerase i | SHLA_124c000050 | Not Available | - | 258358 - 260115 | 64188.3 |
| transposase | SHLA_144c000010 | Not Available | - | 260335 - 261966 | 60376.4 |
| transposase | SHLA_144c000020 | Not Available | - | 262043 - 262387 | 12666.6 |
| transposase | SHLA_144c000030 | Not Available | - | 262384 - 262791 | 14322.0 |
| phytanoyl-coa dioxygenase | SHLA_78c000010 | Not Available | + | 264609 - 265718 | 39837.4 |
| monosaccharide abc transporter substrate-binding protein, cut2 family | SHLA_78c000020 | Not Available | + | 265789 - 266733 | 33057.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.