Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 2-oxo-hepta-3-ene-1,7-dioic acid hydratase hpcg | SHLA_2c002140 | Not Available | + | 220468 - 221250 | 28221.1 |
| 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase hpch | SHLA_2c002150 | Not Available | + | 221258 - 222025 | 26790.2 |
| agmatinase | SHLA_2c002160 | Not Available | - | 222239 - 223222 | 35284.6 |
| putative trap transporter large permease protein | SHLA_2c002170 | Not Available | - | 223250 - 224530 | 45494.0 |
| trap dicarboxylate transporter, dctq subunit | SHLA_2c002180 | Not Available | - | 224534 - 225151 | 22602.7 |
| trap-type c4-dicarboxylate transport system periplasmic component | SHLA_2c002190 | Not Available | - | 225204 - 226208 | 36701.1 |
| transcriptional regulator | SHLA_2c002200 | Not Available | + | 226356 - 227267 | 33812.8 |
| methyl-accepting chemotaxis protein | SHLA_2c002210 | Not Available | + | 227656 - 229590 | 68809.6 |
| hypothetical protein | SHLA_2c002220 | Not Available | - | 229655 - 230086 | 16159.2 |
| abc-type sugar transport system periplasmic component | SHLA_2c002230 | Not Available | + | 230833 - 231834 | 36587.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.