Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative nad/fad-binding protein | SHLA_2c002040 | Not Available | + | 210443 - 211774 | 49292.4 |
| transcriptional regulator gntr family | SHLA_2c002050 | Not Available | - | 211906 - 212604 | 26749.1 |
| trap-type c4-dicarboxylate transport system small permease component | SHLA_2c002060 | Not Available | + | 212722 - 213327 | 21968.4 |
| trap transporter, dctm subunit subfamily | SHLA_2c002070 | Not Available | + | 213324 - 214595 | 44506.0 |
| l-carnitine dehydrogenase lcdh | SHLA_2c002080 | Not Available | + | 214595 - 215548 | 33833.6 |
| sialic acid-binding periplasmic protein siap | SHLA_2c002090 | Not Available | + | 215545 - 216516 | 34981.2 |
| oxidoreductase protein | SHLA_2c002100 | Not Available | + | 216574 - 217434 | 31489.9 |
| glyoxalase/bleomycin resistance protein/dioxygenase | SHLA_2c002110 | Not Available | + | 217431 - 218288 | 32228.5 |
| decarboxylase | SHLA_2c002120 | Not Available | + | 218293 - 218970 | 23705.8 |
| 2-hydroxymuconic semialdehyde dehydrogenase dmpc | SHLA_2c002130 | Not Available | + | 218999 - 220453 | 51643.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.