Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribonucleoside-diphosphate reductase, class 1b, beta subunit | SHLA_2c001540 | Not Available | + | 160905 - 161894 | 37558.4 |
| octopine catabolism/uptake operon regulatory protein occr | SHLA_2c001550 | Not Available | - | 161958 - 162863 | 33012.3 |
| amine acid abc transporter, permease protein his/glu/gln/arg/opine family | SHLA_2c001560 | Not Available | + | 162996 - 163712 | 25098.1 |
| amine acid abc transporter, permease protein his/glu/gln/arg/opine family | SHLA_2c001570 | Not Available | + | 163709 - 164428 | 26227.9 |
| abc-type histidine transport system atpase component | SHLA_2c001580 | Not Available | + | 164425 - 165207 | 28912.9 |
| octopine-binding periplasmic protein occt | SHLA_2c001590 | Not Available | + | 165235 - 166059 | 29190.0 |
| opine oxidase subunit b | SHLA_2c001600 | Not Available | + | 166214 - 167335 | 39409.2 |
| sarcosine oxidase subunit alpha | SHLA_2c001610 | Not Available | + | 167319 - 167621 | 10835.2 |
| opine oxidase subunit a | SHLA_2c001620 | Not Available | + | 167618 - 169084 | 51292.1 |
| putative translation initiation inhibitor, yjgf family | SHLA_2c001630 | Not Available | + | 169104 - 169448 | 12587.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.