Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine abc transporter atp-binding subunit | SHLA_2c000040 | Not Available | - | 4676 - 5800 | 39993.1 |
| spermidine/putrescine-binding periplasmic protein potd | SHLA_2c000050 | Not Available | - | 5868 - 6896 | 37212.1 |
| spermidine/putrescine transport system permease protein potc | SHLA_2c000060 | Not Available | - | 6924 - 7712 | 27240.3 |
| spermidine/putrescine transport system permease protein potb | SHLA_2c000070 | Not Available | - | 7709 - 8569 | 30789.1 |
| transcriptional regulator | SHLA_2c000080 | Not Available | - | 8566 - 9258 | 25971.5 |
| arac-type dna-binding domain-containing protein | SHLA_2c000090 | Not Available | + | 9695 - 10657 | 36381.2 |
| abc-type sugar transport system periplasmic component | SHLA_2c000100 | Not Available | + | 10859 - 12136 | 45679.7 |
| sugar abc transporter, permease protein | SHLA_2c000110 | Not Available | + | 12203 - 13066 | 32129.3 |
| abc-type sugar transport system permease component | SHLA_2c000120 | Not Available | + | 13063 - 13875 | 29188.4 |
| putative d-xylulose reductase | SHLA_2c000130 | Not Available | + | 13893 - 14936 | 36004.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.