Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| high-affinity branched-chain amino acid transport atp-binding protein livf | SHLA_35c000350 | Not Available | - | 1089649 - 1090365 | 25120.5 |
| high-affinity branched-chain amino acid transport atp-binding protein livg | SHLA_35c000360 | Not Available | - | 1090346 - 1091110 | 27360.3 |
| putative transmembrane component of abc transporter | SHLA_35c000370 | Not Available | - | 1091107 - 1092114 | 34664.2 |
| abc-type branched-chain amino acid transport system permease component | SHLA_35c000380 | Not Available | - | 1092114 - 1092977 | 30377.2 |
| abc-type branched-chain amino acid transport system periplasmic component | SHLA_35c000390 | Not Available | - | 1093167 - 1094339 | 40810.5 |
| 3-carboxy-cis,cis-muconate cycloisomerase pcab | SHLA_35c000400 | Not Available | - | 1094479 - 1095534 | 36583.4 |
| protocatechuate 3,4-dioxygenase alpha chain | SHLA_35c000410 | Not Available | - | 1095730 - 1096344 | 22246.2 |
| protocatechuate 3,4-dioxygenase beta chain | SHLA_35c000420 | Not Available | - | 1096344 - 1097093 | 27925.3 |
| 4-carboxymuconolactone decarboxylase pcac | SHLA_35c000430 | Not Available | - | 1097101 - 1097505 | 14621.3 |
| 3-oxoadipate enol-lactonase 2 | SHLA_35c000440 | Not Available | - | 1097498 - 1098310 | 29182.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.