Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc-type branched-chain amino acid transport system periplasmic component | SHLA_35c000250 | Not Available | + | 1079889 - 1081115 | 43880.9 |
| branched-chain amino acid abc-type transport system permease component | SHLA_35c000260 | Not Available | + | 1081372 - 1082244 | 30280.3 |
| abc-type branched-chain amino acid transport system permease component | SHLA_35c000270 | Not Available | + | 1082241 - 1083164 | 33010.6 |
| abc-type branched-chain amino acid transport system atpase component | SHLA_35c000280 | Not Available | + | 1083161 - 1083889 | 25454.2 |
| abc-type branched-chain amino acid transport system atpase component | SHLA_35c000290 | Not Available | + | 1083882 - 1084595 | 24989.7 |
| vanillin dehydrogenase vdh | SHLA_35c000300 | Not Available | + | 1084617 - 1086068 | 50292.4 |
| short-chain dehydrogenase/reductase sdr | SHLA_35c000310 | Not Available | + | 1086072 - 1086830 | 26067.4 |
| hypothetical protein | SHLA_35c000320 | Not Available | - | 1086899 - 1087075 | 6423.96 |
| cupin domain-containing protein | SHLA_35c000330 | Not Available | - | 1087219 - 1087752 | 20760.4 |
| thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase | SHLA_35c000340 | Not Available | - | 1087776 - 1089497 | 60417.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.