Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella sp. DD12 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella sp. DD12
Accession NumberAYLZ00000000.2
Gene Summary
Adenine Count
1407629 bp
Thymine Count
1405590 bp
Guanine Count
2434616 bp
Cytosine Count
2435418 bp
Genome Length
7683253 bp
Protein-coding Genes
7209 genes
Non-Coding Genes
194 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lysine-arginine-ornithine-binding periplasmic protein argt | SHLA_23c000440 | Not Available | + | 926639 - 927403 | 27436.8 |
| histidine transport system permease protein hisq | SHLA_23c000450 | Not Available | + | 927409 - 928098 | 24652.2 |
| amine acid abc transporter, permease protein his/glu/gln/arg/opine family | SHLA_23c000460 | Not Available | + | 928095 - 928787 | 25868.3 |
| arginase/agmatinase/formiminoglutamase | SHLA_23c000470 | Not Available | + | 928862 - 929821 | 33428.2 |
| hypothetical protein | SHLA_23c000480 | Not Available | - | 929874 - 930803 | 34264.9 |
| ornithine cyclodeaminase arcb | SHLA_23c000490 | Not Available | - | 930814 - 931863 | 37998.5 |
| transcriptional regulator | SHLA_23c000500 | Not Available | + | 931991 - 932434 | 16072.3 |
| putative d,d-dipeptide transport atp-binding protein ddpd | SHLA_23c000510 | Not Available | - | 933044 - 933721 | 24111.3 |
| hypothetical protein | SHLA_23c000520 | Not Available | - | 933838 - 934131 | 10547.7 |
| putative gtpase | SHLA_23c000530 | Not Available | - | 934128 - 935258 | 41500.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.