Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_00170 | Q16D98 | + | 12293 - 12745 | 16007.2 |
| riboflavin transporter | shim_00180 | Q92JG1 | + | 12826 - 13779 | 34258.8 |
| beta-d-glucose-1-phosphatase | shim_00190 | Not Available | + | 13847 - 14470 | 23415.5 |
| l-lysine cyclodeaminase | shim_00200 | A1B196 | + | 14467 - 15375 | 33018.1 |
| nitrate transporter | shim_00210 | Not Available | - | 15546 - 16778 | 43385.9 |
| afg1-like atpase | shim_00220 | Q3V384 | + | 16925 - 17992 | 39837.9 |
| hypothetical protein | shim_00230 | Not Available | + | 18150 - 18413 | 9983.14 |
| Trna-trp | Not Available | Not Available | + | 18434 - 18509 | Not Available |
| hypothetical protein | shim_00250 | Not Available | + | 18638 - 19360 | 26751.6 |
| tpr repeat-containing protein yrrb | shim_00260 | Not Available | - | 19357 - 20664 | 48246.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.