Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| virulence protein | shim_39730 | A0A0U2WCB2 | + | 3997358 - 3997756 | 14391.1 |
| fmn-dependent nadph-azoreductase | shim_39740 | Q9FAW5 | - | 3997853 - 3998392 | 18681.3 |
| putative lipoprotein yiad precursor | shim_39750 | P13794 | - | 3998483 - 3999136 | 22760.6 |
| bifunctional transcriptional activator/dna repair enzyme ada | shim_39760 | P19220 | - | 3999263 - 4000120 | 31225.6 |
| bacterial regulatory protein, tetr family | shim_39770 | Not Available | + | 4000262 - 4000807 | 19295.8 |
| fatty acid hydroxylase superfamily protein | shim_39780 | P68434 | + | 4000804 - 4001652 | 32186.1 |
| ion transport protein | shim_39790 | Not Available | + | 4001741 - 4002514 | 28451.8 |
| endonuclease iii | shim_39800 | P0AB84 | + | 4002564 - 4003208 | 24177.1 |
| 5-dehydro-2-deoxygluconokinase | shim_39810 | Q55480 | + | 4003205 - 4004191 | 34908.4 |
| core-2/i-branching enzyme | shim_39820 | Not Available | - | 4004371 - 4005948 | 61285.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.