Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative aliphatic sulfonates transport permease protein ssuc | shim_00570 | Q576D9 | + | 49504 - 50343 | 30702.7 |
| bicarbonate transport atp-binding protein cmpd | shim_00580 | Q2YJB5 | + | 50340 - 51107 | 28252.7 |
| proclavaminate amidinohydrolase | shim_00590 | Not Available | + | 51323 - 52474 | 41964.1 |
| hypothetical protein | shim_00600 | Not Available | + | 52471 - 52926 | 17254.2 |
| hypothetical protein | shim_00610 | Not Available | + | 52923 - 53075 | 5292.64 |
| glutathione s-transferase gstb | shim_00620 | Not Available | - | 53528 - 54169 | 24664.2 |
| Trna-met | Not Available | Not Available | + | 54510 - 54586 | Not Available |
| Trna-ala | Not Available | Not Available | + | 55053 - 55128 | Not Available |
| hypothetical protein | shim_00650 | Not Available | - | 55225 - 55548 | 11848.2 |
| hypothetical protein | shim_00660 | Not Available | + | 55658 - 56347 | 25782.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.