Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_00470 | Q7ZVJ8 | + | 41111 - 41770 | 23209.6 |
| carboxymuconolactone decarboxylase family protein | shim_00480 | P27749 | + | 41884 - 42222 | 11917.5 |
| ef hand | shim_00490 | Not Available | + | 42281 - 42679 | 14226.8 |
| alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase | shim_00500 | Q700X4 | - | 42726 - 43610 | 32872.9 |
| putative fad-linked oxidoreductase | shim_00510 | Not Available | - | 43607 - 45025 | 51137.7 |
| cytosine deaminase | shim_00520 | B9J8S0 | - | 45022 - 46269 | 44304.0 |
| creatinine amidohydrolase | shim_00530 | P9WP58 | - | 46275 - 47060 | 27902.1 |
| hypothetical protein | shim_00540 | Not Available | + | 47078 - 47263 | 6835.34 |
| endoribonuclease l-psp | shim_00550 | Not Available | + | 47301 - 47690 | 14005.8 |
| alkanesulfonate transporter substrate-binding subunit | shim_00560 | Not Available | + | 48401 - 49468 | 37133.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.