Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_00370 | Not Available | - | 32867 - 33070 | 7480.53 |
| hypothetical protein | shim_00380 | Not Available | + | 33109 - 33207 | 3340.21 |
| galactose/methyl galactoside import atp-binding protein mgla | shim_00390 | A2RKA7 | + | 33204 - 34751 | 54905.1 |
| beta-methylgalactoside transporter inner membrane component | shim_00400 | D4GPW2 | + | 34748 - 35827 | 38208.7 |
| hypothetical protein | shim_00410 | Not Available | + | 35827 - 36222 | 14721.0 |
| branched-chain amino acid transport system / permease component | shim_00420 | D4GPW1 | + | 36222 - 37142 | 31953.4 |
| purine-binding protein precursor | shim_00430 | Q2YKI6 | + | 37186 - 38265 | 38234.8 |
| hypothetical protein | shim_00440 | Not Available | - | 38343 - 38708 | 12609.8 |
| l-glyceraldehyde 3-phosphate reductase | shim_00450 | P77735 | + | 39100 - 40038 | 33653.9 |
| hydrogen cyanide synthase subunit hcnc precursor | shim_00460 | Q9HXE3 | + | 40035 - 41111 | 38225.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.