Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp phosphoribosyltransferase | shim_00270 | O08385 | - | 21021 - 21719 | 25187.1 |
| histidine--trna ligase | shim_00280 | A6X3C2 | - | 21716 - 22801 | 39620.2 |
| histidine--trna ligase | shim_00290 | Q5LVN3 | - | 22801 - 24303 | 54705.9 |
| inner membrane protein yqik | shim_00300 | P77306 | - | 24473 - 26164 | 61416.4 |
| inner membrane protein yqij | shim_00310 | Not Available | - | 26216 - 26911 | 24571.8 |
| helix-turn-helix protein | shim_00320 | Not Available | + | 27049 - 27546 | 18601.2 |
| carnitinyl-coa dehydratase | shim_00330 | O53561 | - | 27561 - 28364 | 27743.2 |
| protein slyx | shim_00340 | Not Available | + | 28467 - 28661 | 7311.82 |
| hypothetical protein | shim_00350 | Not Available | + | 28618 - 28983 | 13551.5 |
| dna polymerase iii subunit alpha | shim_00360 | Q9A700 | - | 29157 - 32678 | 129101.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.