Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_00080 | Not Available | + | 5531 - 6229 | 26709.8 |
| 5s ribosomal rna | Not Available | Not Available | + | 5812 - 5925 | Not Available |
| cytochrome c-556 | shim_00090 | Not Available | + | 6803 - 7228 | 14921.0 |
| peptidase inhibitor i78 family protein | shim_00100 | Not Available | - | 7253 - 7534 | 9798.72 |
| s-(hydroxymethyl)glutathione dehydrogenase | shim_00110 | P45382 | + | 7694 - 8830 | 40188.5 |
| von willebrand factor type a domain protein | shim_00120 | Not Available | - | 8890 - 9567 | 23736.2 |
| dna-binding transcriptional repressor acrr | shim_00130 | Not Available | - | 9664 - 10290 | 23167.0 |
| hypothetical protein | shim_00140 | Not Available | - | 10332 - 10454 | 4468.52 |
| putative transporter yfdv | shim_00150 | Not Available | + | 10488 - 11417 | 32739.2 |
| s-formylglutathione hydrolase | shim_00160 | A1AXZ2 | + | 11456 - 12289 | 30589.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.