Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sulfotransferase family protein | shim_39830 | Not Available | + | 4006095 - 4006913 | 31411.1 |
| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor | shim_39840 | Not Available | - | 4007003 - 4008157 | 40614.7 |
| long-chain-fatty-acid--coa ligase fadd15 | shim_39850 | Q7TYX8 | - | 4008205 - 4010088 | 70232.7 |
| high-affinity branched-chain amino acid transport atp-binding protein livf | shim_39860 | Not Available | - | 4010111 - 4010884 | 28730.2 |
| sulfate/thiosulfate import atp-binding protein cysa | shim_39870 | Not Available | - | 4010884 - 4011654 | 28071.6 |
| leucine/isoleucine/valine transporter permease subunit | shim_39880 | Not Available | - | 4011651 - 4012736 | 39687.0 |
| high-affinity branched-chain amino acid transport system permease protein livh | shim_39890 | Not Available | - | 4012742 - 4013617 | 30954.0 |
| acyl-coa dehydrogenase fade12 | shim_39900 | Not Available | - | 4013767 - 4014882 | 39165.1 |
| acyl-coa dehydrogenase | shim_39910 | I6Y3V5 | - | 4014893 - 4016074 | 43240.2 |
| hth-type transcriptional repressor kstr2 | shim_39920 | Not Available | + | 4016237 - 4016869 | 23460.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.