Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nad dependent epimerase/dehydratase family protein | shim_39530 | Q88NN6 | + | 3975658 - 3976497 | 30327.8 |
| ribose-5-phosphate isomerase b | shim_39540 | P37351 | - | 3976494 - 3976928 | 15106.1 |
| hypothetical protein | shim_39550 | Not Available | + | 3977189 - 3977407 | 6660.11 |
| dna gyrase subunit b | shim_39560 | P0CAX1 | - | 3977618 - 3980038 | 89424.4 |
| dna replication and repair protein recf | shim_39570 | Q2KDX0 | - | 3980134 - 3981240 | 40210.8 |
| dna polymerase iii subunit beta | shim_39580 | P0CAU5 | - | 3981315 - 3982433 | 40697.4 |
| chromosomal replication initiator protein dnaa | shim_39590 | Q16DK6 | - | 3982608 - 3984020 | 52835.3 |
| 30s ribosomal protein s20 | shim_39600 | Q1GC53 | - | 3984600 - 3984863 | 9835.96 |
| putative enoyl-coa hydratase echa8 | shim_39610 | P64017 | - | 3985247 - 3986023 | 27913.6 |
| formamidopyrimidine-dna glycosylase | shim_39620 | Q5LWT9 | - | 3986087 - 3986938 | 31159.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.