Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thiosulfate sulfurtransferase glpe | shim_39430 | Q5LWN8 | - | 3963518 - 3964426 | 34106.6 |
| sulfite exporter taue/safe | shim_39440 | Not Available | - | 3964553 - 3965299 | 26140.1 |
| 3-keto-5-aminohexanoate cleavage enzyme | shim_39450 | Not Available | - | 3965364 - 3966221 | 30618.8 |
| hypothetical protein | shim_39460 | Not Available | - | 3966222 - 3967034 | 29543.6 |
| methylmalonyl-coa carboxyltransferase 12s subunit | shim_39470 | O86318 | - | 3967040 - 3968659 | 57070.4 |
| transcriptional repressor paax | shim_39480 | Not Available | + | 3968832 - 3969608 | 28252.2 |
| hth-type transcriptional regulator gltr | shim_39490 | P39647 | + | 3969613 - 3970521 | 32890.8 |
| acetophenone carboxylase gamma subunit | shim_39500 | Q58374 | + | 3970614 - 3972704 | 73646.9 |
| acetophenone carboxylase delta subunit | shim_39510 | Not Available | + | 3972697 - 3974403 | 60493.1 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | shim_39520 | Q6DCP1 | + | 3974403 - 3975626 | 44762.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.